Just in case I will need it the next time ... This article is a good description how to

  • Adding trusted root and intermediary certificates to the Cell default trust store
  • Generating a certificate signer request
  • Installing a signed certificate
  • Configuring the servers to use the signed certificate

Although the article is written for Lotus sametime in can be used for other Websphere servers as well.

Websphere: Replacing the default IBM self-signed certificate with another certificate
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